I wondered about the roof A/C issues while driving. (Sorry about the dog...) That was why I commented about using the onboard battery charger while driving as this can cause issues as well to the alternator on the chassis. If you installed an outlet for the charger that is switched you could turn off unit while driving.
The other way to do it is just leave it wired to shorepower side only but have the ability to move the cord to your generator output when parked for long periods of time.
Gotta Go!! Fire Call!
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